PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41175.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 235aa    MW: 27448.3 Da    PI: 5.8276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41175.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l+ +v+++G ++W+  ++  g+ R++k+c++rw +yl
       KHN41175.1 14 KGAWSVEEDKRLIAYVERYGHPNWRQLPKFAGLQRCGKSCRLRWMNYL 61
                     79********************************************97 PP

2Myb_DNA-binding55.61.2e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+ E++++ d++k++G++ W++Ia+ ++ gRt++++k++w+++l
       KHN41175.1  67 RGNYTQKEEQIITDLHKKHGNK-WSLIAENLP-GRTDNEIKNYWHSHL 112
                      899*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23864IPR009057Homeodomain-like
PROSITE profilePS5129417.808961IPR017930Myb domain
SuperFamilySSF466891.94E-3011108IPR009057Homeodomain-like
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001671.15E-91661No hitNo description
PROSITE profilePS5129425.43262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2665114IPR009057Homeodomain-like
SMARTSM007178.7E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
CDDcd001676.26E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVRAPYFDKN GIKKGAWSVE EDKRLIAYVE RYGHPNWRQL PKFAGLQRCG KSCRLRWMNY  60
LRPNLKRGNY TQKEEQIITD LHKKHGNKWS LIAENLPGRT DNEIKNYWHS HLKKFLKDNE  120
NTPFDDDELE SSECKEFERP INEALSGDSH HILESSVSIS SETSYTEDNS PSFSSSHTTE  180
SSTLNFSREE HSVASWETLD AFSSNFWTEP FISENAISQD YFPISSYGTE PFFLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527470.11e-174PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0B2S7I41e-176A0A0B2S7I4_GLYSO; Myb-related protein Myb4
STRINGGLYMA06G45520.11e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-55myb domain protein 14
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]